Variant report

Variant	rs6908173
Chromosome Location	chr6:133511830-133511831
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10081093	1.00[AMR][1000 genomes]
rs6903893	1.00[AMR][1000 genomes]
rs73557798	1.00[AMR][1000 genomes]
rs7775015	1.00[YRI][hapmap]
rs9321390	1.00[AMR][1000 genomes]
rs9483537	1.00[AMR][1000 genomes]
rs9483543	1.00[AMR][1000 genomes]
rs9483544	1.00[AMR][1000 genomes]
rs9483574	1.00[AMR][1000 genomes]
rs9493541	1.00[AMR][1000 genomes]
rs9493557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493590	1.00[AMR][1000 genomes]
rs9493591	1.00[AMR][1000 genomes]
rs9493595	1.00[AMR][1000 genomes]
rs9493603	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv886677	chr6:133454738-133515602	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv464058	chr6:133492507-133527935	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv604698	chr6:133492507-133527935	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv470862	chr6:133492507-133600402	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133508600-133512200	Weak transcription	Fetal Lung	lung
2	chr6:133509200-133512000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:133510200-133512000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:133510400-133512200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:133510800-133512200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:133510800-133512200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:133511400-133512000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:133511800-133512600	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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