Variant report

Variant	rs6903893
Chromosome Location	chr6:133450049-133450050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10081093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6908173	1.00[AMR][1000 genomes]
rs9321390	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483537	1.00[AMR][1000 genomes]
rs9483543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9483544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9493541	1.00[AMR][1000 genomes]
rs9493557	1.00[AMR][1000 genomes]
rs9493590	1.00[AMR][1000 genomes]
rs9493591	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv428154	chr6:133271975-133522803	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv519475	chr6:133350936-133474673	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv2758080	chr6:133444719-133627364	Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759470	chr6:133444719-133627364	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133447200-133450400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:133448200-133452600	Weak transcription	Brain Germinal Matrix	brain
3	chr6:133448600-133455200	Enhancers	Fetal Muscle Leg	muscle
4	chr6:133449200-133452800	Weak transcription	Left Ventricle	heart
5	chr6:133449400-133451000	Weak transcription	Psoas Muscle	Psoas
6	chr6:133449600-133450400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:133449600-133450400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:133449600-133450400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:133449600-133451800	Weak transcription	Fetal Heart	heart
10	chr6:133449600-133452800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:133449600-133453400	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:133449800-133451800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:133449800-133452800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:133450000-133452800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:133450000-133453400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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