Variant report

Variant	rs10081739
Chromosome Location	chr9:73908511-73908512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10429567	0.88[ASN][1000 genomes]
rs10746867	0.86[ASN][1000 genomes]
rs10781007	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10868993	0.86[ASN][1000 genomes]
rs10868994	0.86[ASN][1000 genomes]
rs10869009	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11142749	0.86[ASN][1000 genomes]
rs11142764	0.86[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11142775	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11142776	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11790079	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12340517	0.84[AFR][1000 genomes]
rs12344426	0.84[ASN][1000 genomes]
rs12346966	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12551732	0.86[ASN][1000 genomes]
rs1504381	0.88[ASN][1000 genomes]
rs1504382	0.83[ASN][1000 genomes]
rs1580913	0.85[ASN][1000 genomes]
rs17056652	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2309909	0.86[ASN][1000 genomes]
rs4744626	0.84[ASN][1000 genomes]
rs4744627	0.86[ASN][1000 genomes]
rs4745077	0.85[ASN][1000 genomes]
rs62543438	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7020698	0.81[ASN][1000 genomes]
rs7022575	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7038340	0.86[ASN][1000 genomes]
rs7039499	0.86[ASN][1000 genomes]
rs716387	0.90[ASN][1000 genomes]
rs7850256	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7857188	0.86[ASN][1000 genomes]
rs7858061	0.82[ASN][1000 genomes]
rs7860940	0.82[ASN][1000 genomes]
rs7863093	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7865091	0.81[ASN][1000 genomes]
rs7873142	0.86[ASN][1000 genomes]
rs9785223	0.86[ASN][1000 genomes]
rs989923	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv893443	chr9:73859086-74008905	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv916062	chr9:73861614-74246247	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv614605	chr9:73887092-73915883	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv471311	chr9:73902148-73916953	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv521140	chr9:73907625-73909781	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3693032	chr9:73907625-73909871	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	nsv528257	chr9:73907625-73915535	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv614606	chr9:73907625-73936166	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73908000-73909400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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