Variant report

Variant	rs1504382
Chromosome Location	chr9:73890015-73890016
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10081739	0.83[ASN][1000 genomes]
rs10429473	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10429502	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10429567	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10746867	0.83[ASN][1000 genomes]
rs10746870	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10781007	0.84[ASN][1000 genomes]
rs10781008	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10781009	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10868993	0.83[ASN][1000 genomes]
rs10868994	0.83[ASN][1000 genomes]
rs10869008	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11142749	0.83[ASN][1000 genomes]
rs11142764	0.87[ASN][1000 genomes]
rs11142767	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11142768	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11142770	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11790079	0.87[ASN][1000 genomes]
rs12344426	0.82[ASN][1000 genomes]
rs12551732	0.83[ASN][1000 genomes]
rs1504381	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1504387	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1504398	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1580913	0.83[ASN][1000 genomes]
rs17056652	0.91[ASN][1000 genomes]
rs2062863	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2062864	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2134858	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2309909	0.83[ASN][1000 genomes]
rs2860097	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4744626	0.82[ASN][1000 genomes]
rs4744627	0.83[ASN][1000 genomes]
rs4745077	0.83[ASN][1000 genomes]
rs62543438	0.89[ASN][1000 genomes]
rs6560193	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6560194	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7037178	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7038340	0.83[ASN][1000 genomes]
rs7039499	0.83[ASN][1000 genomes]
rs7044209	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs716387	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7850256	0.91[ASN][1000 genomes]
rs7852254	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7857188	0.83[ASN][1000 genomes]
rs7873142	0.83[ASN][1000 genomes]
rs9785223	0.83[ASN][1000 genomes]
rs989923	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1052375	chr9:73793681-73893133	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv540152	chr9:73793681-73893133	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv893443	chr9:73859086-74008905	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv916062	chr9:73861614-74246247	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv614605	chr9:73887092-73915883	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73887200-73900200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:73887600-73893200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:73888800-73893000	Weak transcription	Liver	Liver
4	chr9:73889000-73890400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:73889600-73893000	Weak transcription	HepG2	liver

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