Variant report

Variant	rs1504398
Chromosome Location	chr9:73836231-73836232
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs10117928	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10125889	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1027721	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1027722	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10429567	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10512008	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10732701	0.85[EUR][1000 genomes]
rs10746861	0.82[ASN][1000 genomes]
rs10746866	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10746867	0.92[ASN][1000 genomes]
rs10780991	0.84[ASN][1000 genomes]
rs10780993	0.84[ASN][1000 genomes]
rs10780998	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10781000	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10781003	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10781007	0.86[ASN][1000 genomes]
rs10868968	0.84[EUR][1000 genomes]
rs10868971	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10868981	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10868982	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10868983	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10868992	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10868993	0.92[ASN][1000 genomes]
rs10868994	0.92[ASN][1000 genomes]
rs10868996	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10868998	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10869007	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11142716	0.84[EUR][1000 genomes]
rs11142735	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11142746	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11142748	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11142749	0.92[ASN][1000 genomes]
rs11142756	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11142764	0.88[ASN][1000 genomes]
rs11790079	0.88[ASN][1000 genomes]
rs12337266	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12338261	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12340517	0.90[ASN][1000 genomes]
rs12340836	0.95[ASN][1000 genomes]
rs12344426	0.90[ASN][1000 genomes]
rs12346443	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12351136	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12551732	0.92[ASN][1000 genomes]
rs13287797	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1329762	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1329764	0.85[EUR][1000 genomes]
rs1329765	0.85[EUR][1000 genomes]
rs1329769	0.84[EUR][1000 genomes]
rs1354459	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1360202	0.84[EUR][1000 genomes]
rs1360203	0.84[EUR][1000 genomes]
rs1394305	0.91[ASN][1000 genomes]
rs1411165	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1411168	0.84[ASN][1000 genomes]
rs1504381	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1504382	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1504394	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1504396	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1504397	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1580911	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1580913	0.91[ASN][1000 genomes]
rs1604854	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17056652	0.84[ASN][1000 genomes]
rs1818186	0.86[ASN][1000 genomes]
rs1831312	0.84[ASN][1000 genomes]
rs2134858	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2174305	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2174306	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2183017	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2309841	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2309908	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2309909	0.92[ASN][1000 genomes]
rs4744623	0.84[EUR][1000 genomes]
rs4744624	0.84[EUR][1000 genomes]
rs4744626	0.90[ASN][1000 genomes]
rs4744627	0.92[ASN][1000 genomes]
rs4745064	0.85[EUR][1000 genomes]
rs4745071	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4745072	0.95[ASN][1000 genomes]
rs4745073	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4745074	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4745075	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4745077	0.91[ASN][1000 genomes]
rs62543438	0.82[ASN][1000 genomes]
rs6560183	0.84[EUR][1000 genomes]
rs6560184	0.84[EUR][1000 genomes]
rs6560185	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6560186	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6560191	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6560192	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7020698	0.87[ASN][1000 genomes]
rs7022632	0.84[EUR][1000 genomes]
rs7024365	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7024634	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7029914	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7034708	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7035778	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7035975	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7038340	0.92[ASN][1000 genomes]
rs7038986	0.85[EUR][1000 genomes]
rs7039499	0.92[ASN][1000 genomes]
rs7044340	0.85[ASN][1000 genomes]
rs7049121	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs716387	0.82[ASN][1000 genomes]
rs719858	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7469513	0.84[EUR][1000 genomes]
rs7849553	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7850256	0.84[ASN][1000 genomes]
rs7850409	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7850909	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7851045	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7857188	0.92[ASN][1000 genomes]
rs7858061	0.96[ASN][1000 genomes]
rs7860940	0.96[ASN][1000 genomes]
rs7860967	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7861071	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7865091	0.96[ASN][1000 genomes]
rs7865847	0.85[ASN][1000 genomes]
rs7870937	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7870970	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7873142	0.92[ASN][1000 genomes]
rs9785223	0.92[ASN][1000 genomes]
rs989923	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1052375	chr9:73793681-73893133	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv540152	chr9:73793681-73893133	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv430073	chr9:73825109-73869960	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv430074	chr9:73825109-73870395	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73834800-73837400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73834800-73838400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:73834800-73838800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links