Variant report

Variant	rs1411168
Chromosome Location	chr9:73781455-73781456
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10746861	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10746867	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10780991	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780993	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868957	0.81[ASN][1000 genomes]
rs10868958	0.81[ASN][1000 genomes]
rs10868959	0.81[ASN][1000 genomes]
rs10868960	0.81[ASN][1000 genomes]
rs10868993	0.82[ASN][1000 genomes]
rs10868994	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11142700	0.84[ASN][1000 genomes]
rs11142749	0.82[ASN][1000 genomes]
rs12340517	0.93[ASN][1000 genomes]
rs12340836	0.88[ASN][1000 genomes]
rs12344426	0.81[ASN][1000 genomes]
rs12551732	0.82[ASN][1000 genomes]
rs1394305	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1504398	0.84[ASN][1000 genomes]
rs1580913	0.82[ASN][1000 genomes]
rs1831312	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964051	0.84[ASN][1000 genomes]
rs2134858	0.84[ASN][1000 genomes]
rs2183300	0.81[ASN][1000 genomes]
rs2309909	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4744626	0.81[ASN][1000 genomes]
rs4744627	0.82[ASN][1000 genomes]
rs4745072	0.88[ASN][1000 genomes]
rs4745077	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7038340	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7039499	0.82[ASN][1000 genomes]
rs7040038	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7044340	0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7857188	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7858061	0.86[ASN][1000 genomes]
rs7860940	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7865091	0.87[ASN][1000 genomes]
rs7865847	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7873142	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9785223	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs989923	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73779600-73782200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:73780600-73784400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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