Variant report

Variant	rs989923
Chromosome Location	chr9:73865660-73865661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10081739	0.86[ASN][1000 genomes]
rs10429567	0.89[ASN][1000 genomes]
rs10746861	0.80[ASN][1000 genomes]
rs10746867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780991	0.82[ASN][1000 genomes]
rs10780993	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10781007	0.94[ASN][1000 genomes]
rs10868993	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868994	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142749	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142764	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11790079	0.96[ASN][1000 genomes]
rs12340517	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12340836	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12344426	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12551732	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1394305	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1411168	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1504381	0.89[ASN][1000 genomes]
rs1504382	0.83[ASN][1000 genomes]
rs1504398	0.92[ASN][1000 genomes]
rs1580913	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17056652	0.92[ASN][1000 genomes]
rs1818186	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1831312	0.82[ASN][1000 genomes]
rs2134858	0.92[ASN][1000 genomes]
rs2309909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744626	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4744627	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4745072	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4745077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62543438	0.90[ASN][1000 genomes]
rs7020698	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7038340	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039499	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7044340	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs716387	0.84[ASN][1000 genomes]
rs7850256	0.92[ASN][1000 genomes]
rs7857188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858061	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7860940	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7865091	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7865847	0.84[ASN][1000 genomes]
rs7873142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9785223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1052375	chr9:73793681-73893133	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv540152	chr9:73793681-73893133	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv430073	chr9:73825109-73869960	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv430074	chr9:73825109-73870395	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv893443	chr9:73859086-74008905	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv916062	chr9:73861614-74246247	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73863600-73866200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:73864400-73866000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr9:73864400-73866400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:73864600-73866000	Enhancers	Liver	Liver
5	chr9:73864600-73866200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr9:73864600-73866400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:73864800-73866200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr9:73864800-73867600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:73865000-73865800	Enhancers	Fetal Intestine Large	intestine
10	chr9:73865200-73866000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr9:73865200-73866000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:73865400-73865800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:73865400-73865800	Enhancers	Fetal Kidney	kidney
14	chr9:73865400-73866000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:73865600-73865800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr9:73865600-73865800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr9:73865600-73865800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr9:73865600-73865800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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