Variant report

Variant	rs7865847
Chromosome Location	chr9:73792674-73792675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10746861	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10746867	0.84[ASN][1000 genomes]
rs10780991	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10780993	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10868993	0.84[ASN][1000 genomes]
rs10868994	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11142700	0.82[ASN][1000 genomes]
rs11142749	0.84[ASN][1000 genomes]
rs11142764	0.80[ASN][1000 genomes]
rs11790079	0.80[ASN][1000 genomes]
rs12340517	0.94[ASN][1000 genomes]
rs12340836	0.90[ASN][1000 genomes]
rs12344426	0.82[ASN][1000 genomes]
rs12551732	0.84[ASN][1000 genomes]
rs1394305	0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1411168	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1504398	0.85[ASN][1000 genomes]
rs1580913	0.83[ASN][1000 genomes]
rs1831312	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1964051	0.83[ASN][1000 genomes]
rs2134858	0.85[ASN][1000 genomes]
rs2309909	0.84[ASN][1000 genomes]
rs4744626	0.82[ASN][1000 genomes]
rs4744627	0.84[ASN][1000 genomes]
rs4745072	0.90[ASN][1000 genomes]
rs4745077	0.83[ASN][1000 genomes]
rs7038340	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs7039499	0.84[ASN][1000 genomes]
rs7040038	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7044340	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7857188	0.84[ASN][1000 genomes]
rs7858061	0.88[ASN][1000 genomes]
rs7860940	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7865091	0.88[ASN][1000 genomes]
rs7873142	0.84[ASN][1000 genomes]
rs9785223	0.84[ASN][1000 genomes]
rs989923	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv984559	chr9:73789685-73831841	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7865847	FAM108B1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73791800-73794000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:73792200-73794200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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