Variant report
| Variant | rs11142700 |
|---|---|
| Chromosome Location | chr9:73757155-73757156 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10746861 | 0.83[ASN][1000 genomes] |
| rs10780991 | 0.84[ASN][1000 genomes] |
| rs10780993 | 0.84[ASN][1000 genomes] |
| rs10868952 | 0.81[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10868953 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10868957 | 0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10868958 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10868959 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10868960 | 0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11142696 | 0.85[ASN][1000 genomes] |
| rs11142699 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1329744 | 0.82[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1329745 | 0.82[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1329747 | 0.81[CEU][hapmap];0.82[JPT][hapmap] |
| rs1411163 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1411168 | 0.84[ASN][1000 genomes] |
| rs1831312 | 0.84[ASN][1000 genomes] |
| rs1964051 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2183300 | 0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7030103 | 0.86[AMR][1000 genomes] |
| rs7044340 | 0.82[ASN][1000 genomes] |
| rs7046666 | 0.82[AMR][1000 genomes] |
| rs7865847 | 0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1035505 | chr9:73709852-73934353 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv614599 | chr9:73755434-73767864 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | n/a | n/a | inside rSNPs | diseases |
| 3 | nsv614600 | chr9:73755602-73765910 | Flanking Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 4 | nsv614601 | chr9:73755602-73767972 | Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| 5 | nsv614602 | chr9:73756531-73767864 | Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:73740400-73758400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
