Variant report

Variant	rs1329747
Chromosome Location	chr9:73737867-73737868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr9:73737680-73737867	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
TRPM3	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10780989	0.95[AFR][1000 genomes]
rs10868952	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10868953	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10868957	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10868958	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10868959	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10868960	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1329744	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1329745	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1411163	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2183300	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4442206	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs567490	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs585624	0.81[EUR][1000 genomes]
rs647165	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6560178	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73735400-73738000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:73736800-73739600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr9:73736800-73741000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:73737000-73739000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr9:73737000-73739000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:73737000-73742600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr9:73737200-73738000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr9:73737200-73738000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr9:73737200-73738000	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:73737200-73738400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:73737200-73738600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr9:73737400-73739800	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr9:73737600-73738400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:73737600-73739000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr9:73737600-73739400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr9:73737600-73739600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr9:73737600-73739800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:73737800-73738400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:73737800-73738800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:73737800-73739000	Enhancers	H1 Cell Line	embryonic stem cell

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