Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10868952	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10868953	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10868957	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10868958	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10868959	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10868960	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11142696	0.83[AMR][1000 genomes]
rs1329744	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1329745	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1329747	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1411163	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2026106	0.80[EUR][1000 genomes]
rs2183300	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4442206	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4745056	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs567490	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs585624	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6560178	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7030103	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7046666	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73737000-73742600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:73738800-73743800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:73739000-73741800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:73739000-73745800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr9:73740200-73742400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:73740400-73758400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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