Variant report
| Variant | rs4442206 |
|---|---|
| Chromosome Location | chr9:73747369-73747370 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:73744785..73747442-chr9:73750160..73752744,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10512010 | 0.87[ASN][1000 genomes] |
| rs10868952 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10868953 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs10868957 | 0.82[AMR][1000 genomes] |
| rs11142699 | 0.81[AMR][1000 genomes] |
| rs1329744 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1329745 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs1329747 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs1411163 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2026105 | 0.85[ASN][1000 genomes] |
| rs2026106 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2183300 | 0.82[AMR][1000 genomes] |
| rs4745056 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs547622 | 0.88[ASN][1000 genomes] |
| rs567490 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs585624 | 0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs603103 | 0.88[ASN][1000 genomes] |
| rs632947 | 0.88[ASN][1000 genomes] |
| rs647165 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6560178 | 0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs662975 | 0.89[ASN][1000 genomes] |
| rs664278 | 0.89[ASN][1000 genomes] |
| rs7030103 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7046666 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs794303 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1035505 | chr9:73709852-73934353 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:73740400-73758400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
