Variant report

Variant	rs10512010
Chromosome Location	chr9:73738626-73738627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2026105	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4442206	0.87[ASN][1000 genomes]
rs4745056	0.84[ASN][1000 genomes]
rs547622	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs585624	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs603103	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs632947	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6560178	0.85[ASN][1000 genomes]
rs662975	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs664278	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7046666	0.84[ASN][1000 genomes]
rs794303	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73736800-73739600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:73736800-73741000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:73737000-73739000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr9:73737000-73739000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr9:73737000-73742600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:73737400-73739800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr9:73737600-73739000	Enhancers	H9 Cell Line	embryonic stem cell
8	chr9:73737600-73739400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr9:73737600-73739600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr9:73737600-73739800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:73737800-73738800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:73737800-73739000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr9:73738000-73739600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:73738000-73740000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr9:73738000-73740000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr9:73738200-73739000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:73738200-73739600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr9:73738400-73738800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:73738400-73738800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr9:73738400-73739000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr9:73738600-73738800	Enhancers	Fetal Brain Female	brain
22	chr9:73738600-73740000	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr9:73738600-73740400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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