Variant report

Variant	rs7046666
Chromosome Location	chr9:73753420-73753421
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10512010	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs10868952	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10868953	0.83[EUR][1000 genomes]
rs10868957	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10868958	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10868959	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10868960	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11142699	0.89[AMR][1000 genomes]
rs11142700	0.82[AMR][1000 genomes]
rs1329744	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1329745	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1329747	0.89[CEU][hapmap]
rs1411163	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1964051	0.82[AMR][1000 genomes]
rs2026105	0.82[ASN][1000 genomes]
rs2026106	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2183300	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4442206	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4745056	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs547622	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs567490	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs585624	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs603103	0.85[ASN][1000 genomes]
rs632947	0.85[ASN][1000 genomes]
rs647165	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6560178	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs662975	0.87[ASN][1000 genomes]
rs664278	0.87[ASN][1000 genomes]
rs7030103	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs794303	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73740400-73758400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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