Variant report

Variant	rs11142699
Chromosome Location	chr9:73757113-73757114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10123263	0.81[ASN][1000 genomes]
rs10746862	0.81[ASN][1000 genomes]
rs10868957	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10868958	0.84[AMR][1000 genomes]
rs10868959	0.84[AMR][1000 genomes]
rs10868960	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10868965	0.81[ASN][1000 genomes]
rs10868967	0.81[ASN][1000 genomes]
rs10868968	0.80[ASN][1000 genomes]
rs11142700	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11142709	0.81[ASN][1000 genomes]
rs11142716	0.80[ASN][1000 genomes]
rs1329747	0.82[CEU][hapmap]
rs1329769	0.80[ASN][1000 genomes]
rs1329770	0.81[ASN][1000 genomes]
rs1360201	0.80[ASN][1000 genomes]
rs1360202	0.80[ASN][1000 genomes]
rs1360203	0.80[ASN][1000 genomes]
rs1411166	0.81[ASN][1000 genomes]
rs1411167	0.80[ASN][1000 genomes]
rs1504403	0.81[ASN][1000 genomes]
rs1854555	0.81[ASN][1000 genomes]
rs1854556	0.81[ASN][1000 genomes]
rs1854557	0.81[ASN][1000 genomes]
rs1964051	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2134862	0.81[ASN][1000 genomes]
rs2174307	0.80[ASN][1000 genomes]
rs2183300	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4442206	0.81[AMR][1000 genomes]
rs4744623	0.80[ASN][1000 genomes]
rs4744624	0.80[ASN][1000 genomes]
rs4745056	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4745062	0.81[ASN][1000 genomes]
rs4745063	0.80[ASN][1000 genomes]
rs6560182	0.81[ASN][1000 genomes]
rs6560183	0.80[ASN][1000 genomes]
rs6560184	0.80[ASN][1000 genomes]
rs7019473	0.81[ASN][1000 genomes]
rs7028656	0.81[ASN][1000 genomes]
rs7038966	0.81[ASN][1000 genomes]
rs7040038	0.83[ASN][1000 genomes]
rs7043845	0.81[ASN][1000 genomes]
rs7046666	0.89[AMR][1000 genomes]
rs7469513	0.80[ASN][1000 genomes]
rs7862622	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv614599	chr9:73755434-73767864	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
3	nsv614600	chr9:73755602-73765910	Flanking Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	inside rSNPs	diseases
4	nsv614601	chr9:73755602-73767972	Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv614602	chr9:73756531-73767864	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73740400-73758400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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