Variant report

Variant	rs603103
Chromosome Location	chr9:73739463-73739464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10512010	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2026105	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4442206	0.88[ASN][1000 genomes]
rs4745056	0.85[ASN][1000 genomes]
rs547622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs585624	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs632947	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6560178	0.86[ASN][1000 genomes]
rs662975	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs664278	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7046666	0.85[ASN][1000 genomes]
rs794303	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73736800-73739600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr9:73736800-73741000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:73737000-73742600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:73737400-73739800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr9:73737600-73739600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr9:73737600-73739800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:73738000-73739600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:73738000-73740000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr9:73738000-73740000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr9:73738200-73739600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr9:73738600-73740000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr9:73738600-73740400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:73738800-73739600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:73738800-73739800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr9:73738800-73743800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:73739000-73740000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr9:73739000-73740000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:73739000-73741800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:73739000-73745800	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr9:73739400-73739800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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