Variant report

Variant	rs10780993
Chromosome Location	chr9:73786685-73786686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10746861	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10746867	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10780991	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10868957	0.81[ASN][1000 genomes]
rs10868958	0.81[ASN][1000 genomes]
rs10868959	0.81[ASN][1000 genomes]
rs10868960	0.81[ASN][1000 genomes]
rs10868993	0.82[ASN][1000 genomes]
rs10868994	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11142700	0.84[ASN][1000 genomes]
rs11142749	0.82[ASN][1000 genomes]
rs12340517	0.93[ASN][1000 genomes]
rs12340836	0.88[ASN][1000 genomes]
rs12344426	0.81[ASN][1000 genomes]
rs12551732	0.82[ASN][1000 genomes]
rs1394305	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1411168	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1504398	0.84[ASN][1000 genomes]
rs1580913	0.82[ASN][1000 genomes]
rs1831312	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964051	0.84[ASN][1000 genomes]
rs2134858	0.84[ASN][1000 genomes]
rs2183300	0.81[ASN][1000 genomes]
rs2309909	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4744626	0.81[ASN][1000 genomes]
rs4744627	0.82[ASN][1000 genomes]
rs4745072	0.88[ASN][1000 genomes]
rs4745077	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7038340	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7039499	0.82[ASN][1000 genomes]
rs7040038	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7044340	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7857188	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7858061	0.86[ASN][1000 genomes]
rs7860940	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7865091	0.87[ASN][1000 genomes]
rs7865847	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7873142	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9785223	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs989923	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035505	chr9:73709852-73934353	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv893442	chr9:73778502-74115344	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73786200-73787200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr9:73786200-73787400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr9:73786400-73786800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:73786400-73786800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr9:73786600-73787000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr9:73786600-73787000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr9:73786600-73788600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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