Variant report

Variant	rs10081828
Chromosome Location	chrX:75407180-75407181
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1024502	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs12392663	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MKK][hapmap]
rs2301864	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs3764752	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs5938405	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5938406	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5982030	0.82[CHB][hapmap]
rs7061930	0.82[CHB][hapmap]
rs7877504	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MKK][hapmap]
rs7877781	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MKK][hapmap]
rs7883004	1.00[MEX][hapmap]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:75394200-75407400	Weak transcription	Esophagus	oesophagus
2	chrX:75394400-75409400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chrX:75394600-75407600	Weak transcription	Fetal Brain Male	brain
4	chrX:75395200-75410200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chrX:75395400-75407600	Weak transcription	Primary B cells from cord blood	blood
6	chrX:75396000-75407200	Weak transcription	Primary T cells from cord blood	blood
7	chrX:75398000-75409400	Weak transcription	HMEC	breast
8	chrX:75398000-75410600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chrX:75400800-75408800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chrX:75401200-75410000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chrX:75402800-75409800	Weak transcription	Liver	Liver
12	chrX:75403800-75407400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chrX:75403800-75407800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chrX:75403800-75410000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chrX:75403800-75410000	Weak transcription	Dnd41	blood
16	chrX:75404000-75409200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chrX:75404800-75412000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chrX:75405000-75407400	Weak transcription	Adipose Nuclei	Adipose
19	chrX:75405000-75407400	Weak transcription	Brain Cingulate Gyrus	brain
20	chrX:75405000-75410600	Weak transcription	HSMM	muscle
21	chrX:75405400-75407800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chrX:75405600-75409400	Weak transcription	Fetal Intestine Large	intestine
23	chrX:75405800-75409800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chrX:75406200-75408400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chrX:75406200-75408600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chrX:75406200-75409600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chrX:75406600-75409600	Weak transcription	A549	lung
28	chrX:75407000-75408400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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