Variant report

Variant	rs3764752
Chromosome Location	chrX:75396965-75396966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chrX:75391360..75395173-chrX:75395398..75399614,7	K562	blood:
2	chrX:75396624..75399008-chrX:75402474..75405316,3	K562	blood:
3	chrX:75396624..75398262-chrX:75402474..75404216,2	K562	blood:

Variant related genes	Relation type
ENSG00000102390	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10081828	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap]
rs1024502	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs12392663	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MKK][hapmap]
rs2301864	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs5938405	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5938406	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5982030	0.82[CHB][hapmap]
rs7061930	0.82[CHB][hapmap]
rs7877504	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MKK][hapmap]
rs7877781	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[MKK][hapmap]
rs7883004	1.00[MEX][hapmap]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:75393800-75399200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chrX:75393800-75402000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chrX:75393800-75402200	Weak transcription	Placenta	Placenta
4	chrX:75393800-75406000	Weak transcription	Small Intestine	intestine
5	chrX:75393800-75406200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chrX:75394000-75398600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chrX:75394000-75402200	Weak transcription	Stomach Mucosa	stomach
8	chrX:75394200-75398600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chrX:75394200-75402000	Weak transcription	Lung	lung
10	chrX:75394200-75402400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chrX:75394200-75402400	Weak transcription	Gastric	stomach
12	chrX:75394200-75405000	Weak transcription	Aorta	Aorta
13	chrX:75394200-75405000	Weak transcription	Brain Substantia Nigra	brain
14	chrX:75394200-75405800	Weak transcription	Colonic Mucosa	Colon
15	chrX:75394200-75406400	Weak transcription	Pancreas	Pancrea
16	chrX:75394200-75406600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chrX:75394200-75407400	Weak transcription	Esophagus	oesophagus
18	chrX:75394400-75406000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chrX:75394400-75409400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chrX:75394600-75404000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chrX:75394600-75407600	Weak transcription	Fetal Brain Male	brain
22	chrX:75394800-75397800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
23	chrX:75394800-75398400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chrX:75394800-75399600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chrX:75394800-75401400	Weak transcription	Brain Hippocampus Middle	brain
26	chrX:75394800-75403200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chrX:75394800-75403400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chrX:75394800-75404600	Weak transcription	Ovary	ovary
29	chrX:75394800-75406400	Weak transcription	Right Ventricle	heart
30	chrX:75395000-75401600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chrX:75395000-75402200	Weak transcription	Thymus	Thymus
32	chrX:75395000-75402400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chrX:75395000-75405400	Weak transcription	Brain Anterior Caudate	brain
34	chrX:75395000-75406400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chrX:75395200-75397000	Weak transcription	Fetal Lung	lung
36	chrX:75395200-75398000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chrX:75395200-75398600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chrX:75395200-75398600	Weak transcription	NHDF-Ad	bronchial
39	chrX:75395200-75398800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chrX:75395200-75399000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chrX:75395200-75399200	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chrX:75395200-75400400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chrX:75395200-75402200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chrX:75395200-75402400	Weak transcription	Spleen	Spleen
45	chrX:75395200-75403200	Weak transcription	Brain Angular Gyrus	brain
46	chrX:75395200-75403800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chrX:75395200-75404200	Weak transcription	Brain Cingulate Gyrus	brain
48	chrX:75395200-75405800	Weak transcription	Brain Germinal Matrix	brain
49	chrX:75395200-75410200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chrX:75395400-75397600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links