Variant report

Variant	rs2301864
Chromosome Location	chrX:75394713-75394714
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chrX:75393051..75395719-chrX:75400387..75402118,2	K562	blood:
2	chrX:75394219..75396336-chrX:75400387..75401890,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10081828	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1024502	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12392663	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs3764752	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs5938405	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5938406	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5982030	0.82[CHB][hapmap]
rs7061930	0.82[CHB][hapmap]
rs7877504	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]
rs7877781	0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2301864	FABP4	trans	brain	seeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:75392000-75394800	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chrX:75392000-75395800	Active TSS	GM12878-XiMat	blood
3	chrX:75392200-75394800	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chrX:75392200-75394800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chrX:75392200-75394800	Active TSS	Fetal Intestine Large	intestine
6	chrX:75392200-75395000	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chrX:75392200-75395200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chrX:75392400-75394800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chrX:75392400-75394800	Active TSS	Right Ventricle	heart
10	chrX:75392400-75395200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chrX:75392400-75395200	Bivalent/Poised TSS	Fetal Brain Female	brain
12	chrX:75392600-75394800	Active TSS	H1 Cell Line	embryonic stem cell
13	chrX:75392600-75394800	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chrX:75392600-75394800	Active TSS	Muscle Satellite Cultured Cells	--
15	chrX:75392600-75394800	Active TSS	HMEC	breast
16	chrX:75392600-75394800	Active TSS	NHEK	skin
17	chrX:75392600-75395000	Active TSS	Fetal Intestine Small	intestine
18	chrX:75392600-75395200	Active TSS	NH-A	brain
19	chrX:75392800-75394800	Active TSS	Rectal Smooth Muscle	rectum
20	chrX:75393600-75395000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chrX:75393800-75394800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chrX:75393800-75395600	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chrX:75393800-75399200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chrX:75393800-75402000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chrX:75393800-75402200	Weak transcription	Placenta	Placenta
26	chrX:75393800-75406000	Weak transcription	Small Intestine	intestine
27	chrX:75393800-75406200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chrX:75394000-75394800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chrX:75394000-75394800	Transcr. at gene 5' and 3'	HSMM	muscle
30	chrX:75394000-75395000	Enhancers	Fetal Heart	heart
31	chrX:75394000-75395200	Genic enhancers	Primary monocytes fromperipheralblood	blood
32	chrX:75394000-75395200	Enhancers	Primary B cells from peripheral blood	blood
33	chrX:75394000-75395200	Enhancers	Spleen	Spleen
34	chrX:75394000-75395400	Enhancers	Primary B cells from cord blood	blood
35	chrX:75394000-75395400	Transcr. at gene 5' and 3'	Dnd41	blood
36	chrX:75394000-75396200	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chrX:75394000-75398600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chrX:75394000-75402200	Weak transcription	Stomach Mucosa	stomach
39	chrX:75394200-75394800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chrX:75394200-75394800	Enhancers	Fetal Thymus	thymus
41	chrX:75394200-75394800	Enhancers	Psoas Muscle	Psoas
42	chrX:75394200-75395000	Enhancers	Primary T cells fromperipheralblood	blood
43	chrX:75394200-75395000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chrX:75394200-75395000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
45	chrX:75394200-75395000	Enhancers	Brain Anterior Caudate	brain
46	chrX:75394200-75395000	Enhancers	Brain Inferior Temporal Lobe	brain
47	chrX:75394200-75395000	Bivalent Enhancer	Fetal Lung	lung
48	chrX:75394200-75395200	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
49	chrX:75394200-75395200	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chrX:75394200-75395200	Enhancers	Adipose Nuclei	Adipose

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