Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106275159..106278117-chr12:106531415..106534582,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000074590	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10082994	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10083066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10083072	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10083134	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112777	0.96[EUR][1000 genomes]
rs11112778	0.96[EUR][1000 genomes]
rs11112779	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112780	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112781	0.96[EUR][1000 genomes]
rs11112782	0.96[EUR][1000 genomes]
rs12296466	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12296673	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12298641	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12299885	0.96[EUR][1000 genomes]
rs12306718	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12310708	0.96[EUR][1000 genomes]
rs12315782	0.96[EUR][1000 genomes]
rs12315953	0.96[EUR][1000 genomes]
rs12316482	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12319374	0.96[EUR][1000 genomes]
rs12321688	0.96[EUR][1000 genomes]
rs12321813	0.96[EUR][1000 genomes]
rs56922342	0.96[EUR][1000 genomes]
rs60418412	0.89[EUR][1000 genomes]
rs60722996	0.96[EUR][1000 genomes]
rs60956336	0.96[EUR][1000 genomes]
rs61110501	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106264200-106276200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:106270400-106275800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr12:106270600-106275600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr12:106273200-106275800	Weak transcription	HSMMtube	muscle
5	chr12:106273600-106277000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:106274000-106277000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:106274200-106276200	Enhancers	K562	blood

Quick Search: