Variant report

Variant	rs11112782
Chromosome Location	chr12:106272424-106272425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10082711	0.96[EUR][1000 genomes]
rs10082994	0.96[EUR][1000 genomes]
rs10083066	0.96[EUR][1000 genomes]
rs10083072	0.96[EUR][1000 genomes]
rs10083134	0.96[EUR][1000 genomes]
rs11112777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112778	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11112779	0.96[EUR][1000 genomes]
rs11112780	0.96[EUR][1000 genomes]
rs11112781	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11112783	0.93[AFR][1000 genomes]
rs12296466	0.96[EUR][1000 genomes]
rs12296673	0.96[EUR][1000 genomes]
rs12298641	0.96[EUR][1000 genomes]
rs12299885	1.00[EUR][1000 genomes]
rs12302856	0.83[AFR][1000 genomes]
rs12306718	0.96[EUR][1000 genomes]
rs12310708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12315782	1.00[EUR][1000 genomes]
rs12315953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12316482	0.96[EUR][1000 genomes]
rs12319374	1.00[EUR][1000 genomes]
rs12321688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12321813	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35997774	0.82[AFR][1000 genomes]
rs56922342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57275238	0.93[AFR][1000 genomes]
rs60418412	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60604017	0.82[AFR][1000 genomes]
rs60722996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60956336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61110501	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106261400-106273000	Weak transcription	HSMMtube	muscle
2	chr12:106264200-106276200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:106270400-106275800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr12:106270600-106274000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr12:106270600-106275600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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