Variant report

Variant	rs12302856
Chromosome Location	chr12:106275782-106275783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106275159..106278117-chr12:106531415..106534582,3	MCF-7	breast:
2	chr12:106275440..106278338-chr12:106282923..106284779,2	K562	blood:

Variant related genes	Relation type
ENSG00000074590	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11112777	0.83[AFR][1000 genomes]
rs11112778	0.83[AFR][1000 genomes]
rs11112781	0.83[AFR][1000 genomes]
rs11112782	0.83[AFR][1000 genomes]
rs11112783	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11834687	1.00[EUR][1000 genomes]
rs12306666	1.00[EUR][1000 genomes]
rs12307329	1.00[EUR][1000 genomes]
rs12310708	0.83[AFR][1000 genomes]
rs12312510	1.00[EUR][1000 genomes]
rs12315953	0.83[AFR][1000 genomes]
rs12321688	0.83[AFR][1000 genomes]
rs12321813	0.94[AFR][1000 genomes]
rs1421437	1.00[EUR][1000 genomes]
rs17037459	1.00[EUR][1000 genomes]
rs17037622	1.00[EUR][1000 genomes]
rs17037733	1.00[EUR][1000 genomes]
rs17037736	1.00[EUR][1000 genomes]
rs17037741	1.00[EUR][1000 genomes]
rs17037742	1.00[EUR][1000 genomes]
rs17037756	1.00[EUR][1000 genomes]
rs17037760	1.00[EUR][1000 genomes]
rs17037763	1.00[EUR][1000 genomes]
rs17038030	1.00[EUR][1000 genomes]
rs35997774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56123105	1.00[EUR][1000 genomes]
rs56922342	0.83[AFR][1000 genomes]
rs57275238	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57321476	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57454138	1.00[EUR][1000 genomes]
rs57687607	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58151108	1.00[EUR][1000 genomes]
rs58650564	1.00[EUR][1000 genomes]
rs60384264	1.00[EUR][1000 genomes]
rs60604017	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60722996	0.83[AFR][1000 genomes]
rs60956336	0.83[AFR][1000 genomes]
rs718790	1.00[EUR][1000 genomes]
rs7307022	1.00[EUR][1000 genomes]
rs73383202	1.00[EUR][1000 genomes]
rs73391241	1.00[EUR][1000 genomes]
rs7963779	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106264200-106276200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:106270400-106275800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr12:106273200-106275800	Weak transcription	HSMMtube	muscle
4	chr12:106273600-106277000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr12:106274000-106277000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:106274200-106276200	Enhancers	K562	blood
7	chr12:106275400-106276000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr12:106275600-106276600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr12:106275600-106277000	Enhancers	Cortex derived primary cultured neurospheres	brain

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