Variant report

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:106254674..106256372-chr12:106314375..106316199,2	MCF-7	breast:
2	chr12:106167922..106169528-chr12:106254907..106257497,2	MCF-7	breast:
3	chr12:106252576..106257330-chr12:106324880..106330173,10	MCF-7	breast:
4	chr12:106254601..106257221-chr12:106327502..106331363,4	MCF-7	breast:
5	chr12:106252439..106256460-chr12:106528954..106534113,10	MCF-7	breast:
6	chr12:106248554..106253147-chr12:106253796..106257710,5	MCF-7	breast:
7	chr12:106253022..106256354-chr12:106530460..106534147,5	MCF-7	breast:
8	chr12:106253691..106256253-chr12:106286526..106288300,2	MCF-7	breast:
9	chr12:106233406..106235430-chr12:106254308..106256994,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000074590	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11112783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11834687	1.00[EUR][1000 genomes]
rs12302856	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12307329	1.00[EUR][1000 genomes]
rs1421437	1.00[EUR][1000 genomes]
rs17037459	1.00[EUR][1000 genomes]
rs17037622	1.00[EUR][1000 genomes]
rs17037733	1.00[EUR][1000 genomes]
rs17037736	1.00[EUR][1000 genomes]
rs17037741	1.00[EUR][1000 genomes]
rs17037742	1.00[EUR][1000 genomes]
rs17037756	1.00[EUR][1000 genomes]
rs17037760	1.00[EUR][1000 genomes]
rs17037763	1.00[EUR][1000 genomes]
rs17038030	1.00[EUR][1000 genomes]
rs35997774	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56123105	1.00[EUR][1000 genomes]
rs57275238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57454138	1.00[EUR][1000 genomes]
rs57687607	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58151108	1.00[EUR][1000 genomes]
rs58650564	1.00[EUR][1000 genomes]
rs60384264	1.00[EUR][1000 genomes]
rs60604017	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs718790	1.00[EUR][1000 genomes]
rs7307022	1.00[EUR][1000 genomes]
rs73383202	1.00[EUR][1000 genomes]
rs73391241	1.00[EUR][1000 genomes]
rs7963779	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106249400-106256800	Weak transcription	HSMMtube	muscle
2	chr12:106255200-106259600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:106255800-106257000	Enhancers	HUVEC	blood vessel
4	chr12:106256200-106256400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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