Variant report

Variant	rs60384264
Chromosome Location	chr12:106339949-106339950
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11112783	1.00[EUR][1000 genomes]
rs11834687	1.00[EUR][1000 genomes]
rs12302856	1.00[EUR][1000 genomes]
rs12306666	1.00[EUR][1000 genomes]
rs12307329	1.00[EUR][1000 genomes]
rs12312510	1.00[EUR][1000 genomes]
rs1421437	1.00[EUR][1000 genomes]
rs17037622	1.00[EUR][1000 genomes]
rs17037733	1.00[EUR][1000 genomes]
rs17037736	1.00[EUR][1000 genomes]
rs17037741	1.00[EUR][1000 genomes]
rs17037742	1.00[EUR][1000 genomes]
rs17037756	1.00[EUR][1000 genomes]
rs17037760	1.00[EUR][1000 genomes]
rs17037763	1.00[EUR][1000 genomes]
rs17038030	1.00[EUR][1000 genomes]
rs28560466	1.00[EUR][1000 genomes]
rs35997774	1.00[EUR][1000 genomes]
rs56123105	1.00[EUR][1000 genomes]
rs57275238	1.00[EUR][1000 genomes]
rs57321476	1.00[EUR][1000 genomes]
rs57454138	1.00[EUR][1000 genomes]
rs57687607	1.00[EUR][1000 genomes]
rs58151108	1.00[EUR][1000 genomes]
rs58650564	1.00[EUR][1000 genomes]
rs60604017	1.00[EUR][1000 genomes]
rs718790	1.00[EUR][1000 genomes]
rs7307022	1.00[EUR][1000 genomes]
rs73383202	1.00[EUR][1000 genomes]
rs73391241	1.00[EUR][1000 genomes]
rs7963779	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106336600-106347400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:106337800-106340800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:106337800-106342400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:106339000-106342000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr12:106339000-106347600	Weak transcription	NHEK	skin
6	chr12:106339200-106343000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr12:106339200-106348600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:106339200-106348600	Weak transcription	HMEC	breast
9	chr12:106339400-106340400	Weak transcription	HSMMtube	muscle
10	chr12:106339400-106340800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:106339600-106340600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr12:106339600-106340600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr12:106339600-106341200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr12:106339600-106341400	Enhancers	Fetal Heart	heart
15	chr12:106339800-106340200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links