Variant report

Variant	rs28560466
Chromosome Location	chr12:106468206-106468207
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11112853	1.00[AMR][1000 genomes]
rs11837255	1.00[AMR][1000 genomes]
rs12306666	1.00[EUR][1000 genomes]
rs12307329	1.00[EUR][1000 genomes]
rs12312510	1.00[EUR][1000 genomes]
rs12315295	1.00[AMR][1000 genomes]
rs12320170	1.00[AMR][1000 genomes]
rs17038030	1.00[EUR][1000 genomes]
rs58151108	1.00[EUR][1000 genomes]
rs60384264	1.00[EUR][1000 genomes]
rs73391241	1.00[EUR][1000 genomes]
rs73399125	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106452400-106468600	Weak transcription	Psoas Muscle	Psoas
2	chr12:106452800-106472200	Weak transcription	HMEC	breast
3	chr12:106452800-106474000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr12:106456600-106468800	Weak transcription	Colonic Mucosa	Colon
5	chr12:106458200-106468600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr12:106458200-106471800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr12:106458400-106468600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr12:106458600-106476800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr12:106458800-106500200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr12:106460200-106468600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr12:106461800-106499600	Weak transcription	Fetal Intestine Large	intestine
12	chr12:106462000-106468600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr12:106462400-106468400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr12:106462400-106468400	Weak transcription	Fetal Intestine Small	intestine
15	chr12:106462400-106468600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr12:106462400-106482600	Weak transcription	Esophagus	oesophagus
17	chr12:106462600-106477400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr12:106462800-106468400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr12:106462800-106477400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr12:106463600-106470800	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr12:106463800-106477600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr12:106464000-106468400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr12:106464000-106468400	Weak transcription	Pancreas	Pancrea
24	chr12:106464000-106470200	Weak transcription	Lung	lung
25	chr12:106464400-106468600	Weak transcription	Fetal Brain Male	brain
26	chr12:106464600-106468400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr12:106464600-106468400	Weak transcription	Aorta	Aorta
28	chr12:106464600-106477400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr12:106464800-106468400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr12:106464800-106468400	Weak transcription	Fetal Muscle Trunk	muscle
31	chr12:106464800-106468600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr12:106464800-106468600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr12:106464800-106472200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr12:106465000-106468400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr12:106465000-106472200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr12:106465200-106468400	Weak transcription	Brain Anterior Caudate	brain
37	chr12:106465200-106468400	Weak transcription	Brain Hippocampus Middle	brain
38	chr12:106465200-106468600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr12:106465200-106469400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr12:106465200-106487000	Weak transcription	Brain Germinal Matrix	brain
41	chr12:106465400-106468600	Weak transcription	Fetal Brain Female	brain
42	chr12:106465400-106468800	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr12:106466000-106470800	Weak transcription	Liver	Liver
44	chr12:106466200-106477600	Genic enhancers	HSMM	muscle
45	chr12:106466800-106468400	Weak transcription	Adipose Nuclei	Adipose
46	chr12:106466800-106471800	Weak transcription	Ovary	ovary
47	chr12:106467000-106468400	Weak transcription	Brain Substantia Nigra	brain
48	chr12:106467000-106477600	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr12:106467200-106468400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr12:106467200-106468400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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