Variant report

Variant	rs11837255
Chromosome Location	chr12:106488364-106488365
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:106486379..106488971-chr12:106490561..106492780,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11112853	1.00[AMR][1000 genomes]
rs11832418	1.00[YRI][hapmap]
rs11837260	0.86[AFR][1000 genomes]
rs11838184	1.00[YRI][hapmap]
rs12315295	1.00[AMR][1000 genomes]
rs12320170	1.00[AMR][1000 genomes]
rs28560466	1.00[AMR][1000 genomes]
rs73399125	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106458800-106500200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:106461800-106499600	Weak transcription	Fetal Intestine Large	intestine
3	chr12:106469000-106490200	Weak transcription	Gastric	stomach
4	chr12:106469000-106499400	Weak transcription	Fetal Intestine Small	intestine
5	chr12:106477600-106492200	Weak transcription	Fetal Brain Female	brain
6	chr12:106478400-106488400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:106478400-106491600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr12:106478600-106492400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:106478800-106491000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr12:106479000-106489000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr12:106479000-106490600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr12:106479200-106490800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr12:106479200-106490800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr12:106479200-106491400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr12:106479400-106488400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr12:106479400-106490800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr12:106481000-106493000	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr12:106482000-106489400	Enhancers	Brain Cingulate Gyrus	brain
19	chr12:106483000-106489800	Weak transcription	Liver	Liver
20	chr12:106483200-106490400	Weak transcription	NHEK	skin
21	chr12:106483800-106491800	Weak transcription	Fetal Brain Male	brain
22	chr12:106484800-106491800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr12:106485200-106491600	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr12:106485200-106500400	Weak transcription	HMEC	breast
25	chr12:106485400-106488400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr12:106485400-106488600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr12:106485400-106489800	Weak transcription	Fetal Stomach	stomach
28	chr12:106485400-106490000	Weak transcription	Fetal Lung	lung
29	chr12:106485400-106490200	Weak transcription	Pancreas	Pancrea
30	chr12:106485400-106500800	Weak transcription	Lung	lung
31	chr12:106485600-106488600	Weak transcription	Right Ventricle	heart
32	chr12:106485600-106488600	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr12:106485600-106489000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr12:106485600-106489400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr12:106485600-106489600	Weak transcription	Fetal Muscle Leg	muscle
36	chr12:106485600-106490400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr12:106485600-106490400	Weak transcription	NHDF-Ad	bronchial
38	chr12:106485600-106496200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr12:106485600-106500600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr12:106485800-106489600	Weak transcription	Ovary	ovary
41	chr12:106485800-106495000	Strong transcription	HSMMtube	muscle
42	chr12:106486000-106489400	Enhancers	Brain Anterior Caudate	brain
43	chr12:106486000-106489800	Enhancers	Brain Angular Gyrus	brain
44	chr12:106486200-106489800	Enhancers	Brain Hippocampus Middle	brain
45	chr12:106486200-106493400	Enhancers	Brain Substantia Nigra	brain
46	chr12:106486800-106488600	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr12:106486800-106489200	Strong transcription	HUVEC	blood vessel
48	chr12:106486800-106490400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr12:106486800-106490600	Enhancers	Fetal Heart	heart
50	chr12:106487000-106489400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links