Variant report

Variant	rs11112853
Chromosome Location	chr12:106461814-106461815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11837255	1.00[AMR][1000 genomes]
rs12315295	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12320170	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12320305	0.81[AFR][1000 genomes]
rs28560466	1.00[AMR][1000 genomes]
rs73399125	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106452400-106468600	Weak transcription	Psoas Muscle	Psoas
2	chr12:106452800-106463600	Weak transcription	NHDF-Ad	bronchial
3	chr12:106452800-106472200	Weak transcription	HMEC	breast
4	chr12:106452800-106474000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr12:106454000-106463400	Weak transcription	Fetal Brain Male	brain
6	chr12:106456400-106465200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr12:106456400-106465400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr12:106456400-106468000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr12:106456600-106468800	Weak transcription	Colonic Mucosa	Colon
10	chr12:106457600-106462600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr12:106457600-106463800	Strong transcription	Liver	Liver
12	chr12:106457600-106465000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr12:106457600-106465000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr12:106457600-106465200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr12:106458200-106468600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr12:106458200-106471800	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr12:106458400-106462600	Strong transcription	Brain Anterior Caudate	brain
18	chr12:106458400-106463200	Weak transcription	Fetal Kidney	kidney
19	chr12:106458400-106464600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr12:106458400-106465200	Strong transcription	Brain Germinal Matrix	brain
21	chr12:106458400-106465200	Strong transcription	Brain Hippocampus Middle	brain
22	chr12:106458400-106468600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr12:106458600-106463000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr12:106458600-106465200	Strong transcription	HUES6 Cell Line	embryonic stem cell
25	chr12:106458600-106476800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr12:106458800-106462800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr12:106458800-106465000	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr12:106458800-106465400	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr12:106458800-106500200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr12:106459000-106462400	Genic enhancers	Right Ventricle	heart
31	chr12:106459000-106464800	Strong transcription	Fetal Muscle Trunk	muscle
32	chr12:106459200-106462200	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr12:106459200-106462600	Strong transcription	Aorta	Aorta
34	chr12:106459200-106465000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr12:106459200-106465200	Strong transcription	Osteobl	bone
36	chr12:106459200-106466200	Strong transcription	NH-A	brain
37	chr12:106459400-106462400	Genic enhancers	Left Ventricle	heart
38	chr12:106459400-106462400	Strong transcription	NHEK	skin
39	chr12:106459400-106462800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr12:106459400-106463400	Strong transcription	Fetal Brain Female	brain
41	chr12:106459400-106464200	Strong transcription	Fetal Lung	lung
42	chr12:106459400-106464600	Strong transcription	Brain Angular Gyrus	brain
43	chr12:106459400-106464800	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr12:106459400-106464800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr12:106459400-106465200	Strong transcription	Brain Cingulate Gyrus	brain
46	chr12:106459600-106464200	Strong transcription	Stomach Smooth Muscle	stomach
47	chr12:106460000-106462600	Strong transcription	Placenta	Placenta
48	chr12:106460000-106464800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr12:106460000-106465000	Strong transcription	Brain Inferior Temporal Lobe	brain
50	chr12:106460200-106462200	Strong transcription	Ovary	ovary

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