Variant report

Variant	rs12306666
Chromosome Location	chr12:106453355-106453356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11112783	1.00[EUR][1000 genomes]
rs12301574	1.00[AMR][1000 genomes]
rs12302325	1.00[AMR][1000 genomes]
rs12302856	1.00[EUR][1000 genomes]
rs12307329	1.00[EUR][1000 genomes]
rs12312510	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17038030	1.00[EUR][1000 genomes]
rs28560466	1.00[EUR][1000 genomes]
rs35997774	1.00[EUR][1000 genomes]
rs57275238	1.00[EUR][1000 genomes]
rs58151108	1.00[EUR][1000 genomes]
rs60060799	1.00[AMR][1000 genomes]
rs60384264	1.00[EUR][1000 genomes]
rs60580783	1.00[AMR][1000 genomes]
rs60604017	1.00[EUR][1000 genomes]
rs73391241	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106415800-106456400	Weak transcription	Aorta	Aorta
2	chr12:106444000-106453600	Weak transcription	Fetal Brain Male	brain
3	chr12:106444000-106457800	Weak transcription	Brain Hippocampus Middle	brain
4	chr12:106446600-106456400	Weak transcription	Right Atrium	heart
5	chr12:106446600-106459400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:106451800-106453600	Enhancers	HSMM	muscle
7	chr12:106452200-106456400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:106452200-106459400	Weak transcription	Fetal Lung	lung
9	chr12:106452200-106460000	Weak transcription	Placenta	Placenta
10	chr12:106452200-106460600	Weak transcription	NHLF	lung
11	chr12:106452400-106457600	Weak transcription	Adipose Nuclei	Adipose
12	chr12:106452400-106457600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr12:106452400-106468600	Weak transcription	Psoas Muscle	Psoas
14	chr12:106452600-106454400	Enhancers	HSMMtube	muscle
15	chr12:106452600-106456400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr12:106452600-106456800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr12:106452600-106459000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr12:106452600-106459400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:106452600-106459400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr12:106452800-106456400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr12:106452800-106456800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr12:106452800-106457600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr12:106452800-106457600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr12:106452800-106457600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr12:106452800-106457600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr12:106452800-106457600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr12:106452800-106457600	Weak transcription	Left Ventricle	heart
28	chr12:106452800-106459200	Weak transcription	Fetal Muscle Leg	muscle
29	chr12:106452800-106459200	Weak transcription	NH-A	brain
30	chr12:106452800-106459200	Weak transcription	Osteobl	bone
31	chr12:106452800-106459400	Weak transcription	NHEK	skin
32	chr12:106452800-106460000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr12:106452800-106460000	Weak transcription	Lung	lung
34	chr12:106452800-106463600	Weak transcription	NHDF-Ad	bronchial
35	chr12:106452800-106472200	Weak transcription	HMEC	breast
36	chr12:106452800-106474000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr12:106453000-106456400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr12:106453000-106457600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr12:106453000-106458800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr12:106453000-106459200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr12:106453000-106460200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr12:106453200-106460200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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