Variant report

Variant	rs12301574
Chromosome Location	chr12:106505618-106505619
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:106499591..106503536-chr12:106504416..106508585,6	MCF-7	breast:
2	chr12:106504477..106507243-chr12:106513286..106514940,2	MCF-7	breast:
3	chr12:106476871..106479855-chr12:106504214..106506974,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000074590	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12302325	1.00[AMR][1000 genomes]
rs12306666	1.00[AMR][1000 genomes]
rs12312510	1.00[AMR][1000 genomes]
rs60060799	1.00[AMR][1000 genomes]
rs60580783	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106493400-106512400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:106495600-106507200	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr12:106498400-106507200	Weak transcription	Pancreas	Pancrea
4	chr12:106499600-106511400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:106499800-106507800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:106499800-106508400	Genic enhancers	HSMM	muscle
7	chr12:106500000-106506200	Enhancers	NHEK	skin
8	chr12:106500000-106507000	Enhancers	Adipose Nuclei	Adipose
9	chr12:106500000-106507400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr12:106500000-106510000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr12:106500200-106507400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr12:106500200-106510200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr12:106500200-106514000	Enhancers	Liver	Liver
14	chr12:106500400-106505800	Enhancers	Brain Substantia Nigra	brain
15	chr12:106500600-106507400	Enhancers	HepG2	liver
16	chr12:106500600-106508600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr12:106500600-106508600	Enhancers	Right Atrium	heart
18	chr12:106500800-106506200	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr12:106500800-106507600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr12:106500800-106510200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:106500800-106521800	Enhancers	Brain Angular Gyrus	brain
22	chr12:106501200-106516800	Enhancers	Right Ventricle	heart
23	chr12:106501400-106510400	Enhancers	Fetal Brain Female	brain
24	chr12:106502000-106507400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr12:106502200-106507000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr12:106502400-106506000	Weak transcription	Esophagus	oesophagus
27	chr12:106502400-106506000	Weak transcription	NHLF	lung
28	chr12:106502400-106507000	Enhancers	Stomach Smooth Muscle	stomach
29	chr12:106502400-106510000	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr12:106502600-106505800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr12:106502600-106505800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr12:106502600-106506000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr12:106502600-106509400	Weak transcription	Gastric	stomach
34	chr12:106502800-106506000	Weak transcription	Fetal Stomach	stomach
35	chr12:106502800-106506000	Weak transcription	NHDF-Ad	bronchial
36	chr12:106502800-106506200	Weak transcription	Colon Smooth Muscle	Colon
37	chr12:106502800-106506400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr12:106502800-106507600	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr12:106502800-106507600	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr12:106503000-106505800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr12:106503000-106506000	Weak transcription	Ovary	ovary
42	chr12:106503000-106506400	Enhancers	Fetal Heart	heart
43	chr12:106503000-106506400	Weak transcription	Stomach Mucosa	stomach
44	chr12:106503000-106507000	Weak transcription	Fetal Kidney	kidney
45	chr12:106503200-106505800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr12:106503200-106505800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr12:106503200-106505800	Weak transcription	Placenta	Placenta
48	chr12:106503200-106505800	Weak transcription	NH-A	brain
49	chr12:106503200-106506000	Weak transcription	Lung	lung
50	chr12:106503200-106507000	Enhancers	Brain Hippocampus Middle	brain

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