Variant report

Variant	rs12312510
Chromosome Location	chr12:106449254-106449255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11112783	1.00[EUR][1000 genomes]
rs12301574	1.00[AMR][1000 genomes]
rs12302325	1.00[AMR][1000 genomes]
rs12302856	1.00[EUR][1000 genomes]
rs12306666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12307329	1.00[EUR][1000 genomes]
rs17038030	1.00[EUR][1000 genomes]
rs28560466	1.00[EUR][1000 genomes]
rs35997774	1.00[EUR][1000 genomes]
rs57275238	1.00[EUR][1000 genomes]
rs58151108	1.00[EUR][1000 genomes]
rs60060799	1.00[AMR][1000 genomes]
rs60384264	1.00[EUR][1000 genomes]
rs60580783	1.00[AMR][1000 genomes]
rs60604017	1.00[EUR][1000 genomes]
rs73391241	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106415800-106456400	Weak transcription	Aorta	Aorta
2	chr12:106443800-106452000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:106444000-106453600	Weak transcription	Fetal Brain Male	brain
4	chr12:106444000-106457800	Weak transcription	Brain Hippocampus Middle	brain
5	chr12:106446600-106451800	Weak transcription	HSMM	muscle
6	chr12:106446600-106456400	Weak transcription	Right Atrium	heart
7	chr12:106446600-106459400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:106447400-106451800	Active TSS	HSMMtube	muscle
9	chr12:106448200-106451800	Weak transcription	NHDF-Ad	bronchial
10	chr12:106449000-106452000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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