Variant report

Variant	rs73391241
Chromosome Location	chr12:106332964-106332965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11112783	1.00[EUR][1000 genomes]
rs11834687	1.00[EUR][1000 genomes]
rs12302856	1.00[EUR][1000 genomes]
rs12306666	1.00[EUR][1000 genomes]
rs12307329	1.00[EUR][1000 genomes]
rs12312510	1.00[EUR][1000 genomes]
rs1421437	1.00[EUR][1000 genomes]
rs17037622	1.00[EUR][1000 genomes]
rs17037733	1.00[EUR][1000 genomes]
rs17037736	1.00[EUR][1000 genomes]
rs17037741	1.00[EUR][1000 genomes]
rs17037742	1.00[EUR][1000 genomes]
rs17037756	1.00[EUR][1000 genomes]
rs17037760	1.00[EUR][1000 genomes]
rs17037763	1.00[EUR][1000 genomes]
rs17038030	1.00[EUR][1000 genomes]
rs28560466	1.00[EUR][1000 genomes]
rs35997774	1.00[EUR][1000 genomes]
rs56123105	1.00[EUR][1000 genomes]
rs57275238	1.00[EUR][1000 genomes]
rs57321476	1.00[EUR][1000 genomes]
rs57454138	1.00[EUR][1000 genomes]
rs57687607	1.00[EUR][1000 genomes]
rs58151108	1.00[EUR][1000 genomes]
rs58650564	1.00[EUR][1000 genomes]
rs60384264	1.00[EUR][1000 genomes]
rs60604017	1.00[EUR][1000 genomes]
rs718790	1.00[EUR][1000 genomes]
rs7307022	1.00[EUR][1000 genomes]
rs73383202	1.00[EUR][1000 genomes]
rs7963779	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106325400-106336600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:106325600-106335200	Enhancers	HMEC	breast
3	chr12:106327200-106335000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr12:106328200-106339200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:106328600-106335000	Enhancers	NHEK	skin
6	chr12:106330600-106334000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr12:106331000-106337200	Weak transcription	HSMM	muscle
8	chr12:106331000-106337400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:106331800-106334800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr12:106332000-106333000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr12:106332000-106333200	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr12:106332200-106337200	Weak transcription	HSMMtube	muscle
13	chr12:106332400-106334000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr12:106332600-106333000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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