Variant report
| Variant | rs57687607 |
|---|---|
| Chromosome Location | chr12:106258080-106258081 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:106256670..106259118-chr12:106531259..106533128,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs11112783 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11834687 | 1.00[EUR][1000 genomes] |
| rs12302856 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12307329 | 1.00[EUR][1000 genomes] |
| rs1421437 | 1.00[EUR][1000 genomes] |
| rs17037459 | 1.00[EUR][1000 genomes] |
| rs17037622 | 1.00[EUR][1000 genomes] |
| rs17037733 | 1.00[EUR][1000 genomes] |
| rs17037736 | 1.00[EUR][1000 genomes] |
| rs17037741 | 1.00[EUR][1000 genomes] |
| rs17037742 | 1.00[EUR][1000 genomes] |
| rs17037756 | 1.00[EUR][1000 genomes] |
| rs17037760 | 1.00[EUR][1000 genomes] |
| rs17037763 | 1.00[EUR][1000 genomes] |
| rs17038030 | 1.00[EUR][1000 genomes] |
| rs35997774 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56123105 | 1.00[EUR][1000 genomes] |
| rs57275238 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57321476 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57454138 | 1.00[EUR][1000 genomes] |
| rs58151108 | 1.00[EUR][1000 genomes] |
| rs58650564 | 1.00[EUR][1000 genomes] |
| rs60384264 | 1.00[EUR][1000 genomes] |
| rs60604017 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs718790 | 1.00[EUR][1000 genomes] |
| rs7307022 | 1.00[EUR][1000 genomes] |
| rs73383202 | 1.00[EUR][1000 genomes] |
| rs73391241 | 1.00[EUR][1000 genomes] |
| rs7963779 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832508 | chr12:106198797-106409112 | Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:106255200-106259600 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr12:106256800-106258400 | Strong transcription | HSMMtube | muscle |
