Variant report

Variant	rs12307329
Chromosome Location	chr12:106432113-106432114
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11112783	1.00[EUR][1000 genomes]
rs12302856	1.00[EUR][1000 genomes]
rs12306666	1.00[EUR][1000 genomes]
rs12312510	1.00[EUR][1000 genomes]
rs17037756	1.00[EUR][1000 genomes]
rs17037760	1.00[EUR][1000 genomes]
rs17037763	1.00[EUR][1000 genomes]
rs17038030	1.00[EUR][1000 genomes]
rs28560466	1.00[EUR][1000 genomes]
rs35997774	1.00[EUR][1000 genomes]
rs57275238	1.00[EUR][1000 genomes]
rs57321476	1.00[EUR][1000 genomes]
rs57687607	1.00[EUR][1000 genomes]
rs58151108	1.00[EUR][1000 genomes]
rs58650564	1.00[EUR][1000 genomes]
rs60384264	1.00[EUR][1000 genomes]
rs60604017	1.00[EUR][1000 genomes]
rs73391241	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106415800-106456400	Weak transcription	Aorta	Aorta
2	chr12:106421800-106436000	Weak transcription	Fetal Brain Male	brain
3	chr12:106427400-106432800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:106427400-106433000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:106427400-106434200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:106427600-106438600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr12:106427600-106438600	Weak transcription	A549	lung
8	chr12:106428200-106433200	Weak transcription	HSMM	muscle
9	chr12:106429800-106433000	Weak transcription	Gastric	stomach
10	chr12:106431000-106432200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr12:106431600-106434600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:106431600-106438000	Strong transcription	HSMMtube	muscle
13	chr12:106431800-106433600	Enhancers	Liver	Liver
14	chr12:106432000-106434200	Enhancers	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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