Variant report

Variant	rs60060799
Chromosome Location	chr12:106615571-106615572
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12301574	1.00[AMR][1000 genomes]
rs12302325	1.00[AMR][1000 genomes]
rs12306666	1.00[AMR][1000 genomes]
rs12312510	1.00[AMR][1000 genomes]
rs60580783	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040534	chr12:106528394-106619175	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106606600-106626400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:106608600-106617200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr12:106614800-106621000	Weak transcription	Esophagus	oesophagus
4	chr12:106615000-106621200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr12:106615200-106615800	Enhancers	Adipose Nuclei	Adipose
6	chr12:106615400-106616000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr12:106615400-106616000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
8	chr12:106615400-106616200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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