Variant report

Variant	rs60580783
Chromosome Location	chr12:106621290-106621291
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:106617619..106621663-chr12:106750007..106752631,4	MCF-7	breast:
2	chr12:106620792..106623041-chr12:106734428..106736723,2	MCF-7	breast:
3	chr12:106620393..106621309-chr12:106739388..106739910,3	MCF-7	breast:
4	chr12:106618176..106623447-chr12:106639085..106644031,7	MCF-7	breast:
5	chr12:106619967..106622887-chr12:106695577..106697877,2	MCF-7	breast:
6	chr12:106620641..106621450-chr12:106739290..106739960,4	K562	blood:
7	chr12:106617980..106623111-chr12:106673260..106676714,5	MCF-7	breast:
8	chr12:106620786..106622962-chr12:106640518..106642749,2	MCF-7	breast:
9	chr12:106620175..106621406-chr12:106675890..106677035,8	K562	blood:
10	chr12:106620940..106625050-chr12:106630217..106634289,4	MCF-7	breast:
11	chr12:106619722..106621935-chr12:106695466..106697508,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000238609	Chromatin interaction
ENSG00000258355	Chromatin interaction
ENSG00000013503	Chromatin interaction
ENSG00000136026	Chromatin interaction
ENSG00000166046	Chromatin interaction

rs_ID	r²[population]
rs12301574	1.00[AMR][1000 genomes]
rs12302325	1.00[AMR][1000 genomes]
rs12306666	1.00[AMR][1000 genomes]
rs12312510	1.00[AMR][1000 genomes]
rs60060799	1.00[AMR][1000 genomes]

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106606600-106626400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:106618000-106632000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr12:106618000-106632200	Weak transcription	Psoas Muscle	Psoas
4	chr12:106618600-106630600	Weak transcription	Ovary	ovary
5	chr12:106618600-106632200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:106619800-106621400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr12:106620600-106621800	Enhancers	Stomach Mucosa	stomach
8	chr12:106620800-106621400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr12:106620800-106621400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr12:106620800-106621400	Enhancers	Fetal Intestine Large	intestine
11	chr12:106620800-106621400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr12:106620800-106621400	Enhancers	HepG2	liver
13	chr12:106620800-106621600	Enhancers	Liver	Liver
14	chr12:106620800-106621600	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr12:106620800-106621800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr12:106620800-106621800	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr12:106620800-106621800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr12:106620800-106621800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr12:106620800-106621800	Enhancers	Placenta	Placenta
20	chr12:106620800-106621800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr12:106620800-106622000	Enhancers	Primary B cells from peripheral blood	blood
22	chr12:106620800-106622000	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr12:106620800-106622000	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr12:106620800-106622000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr12:106620800-106622000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr12:106620800-106622000	Enhancers	Fetal Heart	heart
27	chr12:106620800-106622000	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr12:106620800-106622000	Enhancers	Hela-S3	cervix
29	chr12:106620800-106622000	Enhancers	NHEK	skin
30	chr12:106620800-106622200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr12:106620800-106622200	Enhancers	Primary T cells from cord blood	blood
32	chr12:106620800-106622200	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr12:106620800-106622200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr12:106620800-106622200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
35	chr12:106620800-106622200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr12:106620800-106622200	Enhancers	HMEC	breast
37	chr12:106620800-106622400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
38	chr12:106620800-106622400	Enhancers	Primary T cells fromperipheralblood	blood
39	chr12:106620800-106622400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr12:106620800-106622400	Enhancers	Primary T helper cells fromperipheralblood	blood
41	chr12:106620800-106622400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr12:106620800-106623000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr12:106620800-106623200	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr12:106620800-106630400	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr12:106621000-106621400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr12:106621000-106621600	Enhancers	Adipose Nuclei	Adipose
47	chr12:106621000-106621600	Weak transcription	Fetal Lung	lung
48	chr12:106621000-106621600	Enhancers	A549	lung
49	chr12:106621000-106621800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr12:106621000-106621800	Enhancers	Muscle Satellite Cultured Cells	--

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