Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10082711	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10082994	0.96[EUR][1000 genomes]
rs10083066	0.96[EUR][1000 genomes]
rs10083072	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10083134	0.96[EUR][1000 genomes]
rs11112777	1.00[EUR][1000 genomes]
rs11112778	1.00[EUR][1000 genomes]
rs11112779	0.96[EUR][1000 genomes]
rs11112780	0.96[EUR][1000 genomes]
rs11112781	1.00[EUR][1000 genomes]
rs11112782	1.00[EUR][1000 genomes]
rs11112798	1.00[ASN][1000 genomes]
rs12296466	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12296673	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12298641	0.96[EUR][1000 genomes]
rs12299885	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12306718	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12310708	1.00[EUR][1000 genomes]
rs12315782	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12315953	1.00[EUR][1000 genomes]
rs12316482	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12321688	1.00[EUR][1000 genomes]
rs12321813	1.00[EUR][1000 genomes]
rs56922342	1.00[EUR][1000 genomes]
rs60418412	0.93[EUR][1000 genomes]
rs60722996	1.00[EUR][1000 genomes]
rs60956336	1.00[EUR][1000 genomes]
rs61110501	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106280200-106284200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr12:106280600-106284000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:106281000-106283200	Weak transcription	Aorta	Aorta
4	chr12:106281600-106283200	Enhancers	HSMMtube	muscle
5	chr12:106282200-106282400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr12:106282200-106283000	Enhancers	HSMM	muscle
7	chr12:106282200-106283200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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