Variant report

Variant	rs10085001
Chromosome Location	chr4:144399384-144399385
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11933278	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11940828	0.83[EUR][1000 genomes]
rs11940915	0.83[EUR][1000 genomes]
rs17017770	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2666350	1.00[GIH][hapmap]
rs28755855	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28924081	1.00[EUR][1000 genomes]
rs28924084	1.00[EUR][1000 genomes]
rs34140972	0.83[EUR][1000 genomes]
rs57652703	0.83[EUR][1000 genomes]
rs59649455	0.83[EUR][1000 genomes]
rs60848167	0.83[EUR][1000 genomes]
rs6811304	0.83[EUR][1000 genomes]
rs6815420	0.83[EUR][1000 genomes]
rs6817754	0.83[EUR][1000 genomes]
rs6820204	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6842199	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6858550	0.83[EUR][1000 genomes]
rs72936486	1.00[EUR][1000 genomes]
rs72949189	0.83[EUR][1000 genomes]
rs72949196	0.83[EUR][1000 genomes]
rs72949200	0.83[EUR][1000 genomes]
rs7691050	1.00[CEU][hapmap];1.00[GIH][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757960	chr4:144348293-145131592	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	esv2759288	chr4:144348293-145131592	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1019980	chr4:144350575-144399936	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv830103	chr4:144393398-144553045	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144353600-144400000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:144376800-144410000	Weak transcription	Pancreas	Pancrea
3	chr4:144382800-144400600	Weak transcription	Esophagus	oesophagus
4	chr4:144382800-144410200	Weak transcription	Gastric	stomach
5	chr4:144383000-144405800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:144384200-144400600	Weak transcription	Right Ventricle	heart
7	chr4:144384200-144409800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:144384400-144400200	Weak transcription	Ovary	ovary
9	chr4:144390400-144400200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:144390400-144401000	Weak transcription	Aorta	Aorta
11	chr4:144390800-144399600	Weak transcription	Fetal Muscle Leg	muscle
12	chr4:144391000-144400000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:144391000-144400000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:144391000-144401800	Weak transcription	Brain Anterior Caudate	brain
15	chr4:144391400-144399800	Weak transcription	Fetal Heart	heart
16	chr4:144391800-144399800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr4:144391800-144400200	Weak transcription	K562	blood
18	chr4:144392000-144399600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr4:144392000-144400000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:144392000-144400800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr4:144392200-144406000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr4:144393600-144409200	Weak transcription	Placenta	Placenta
23	chr4:144394000-144400400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr4:144394800-144402200	Weak transcription	Brain Angular Gyrus	brain
25	chr4:144395000-144401400	Weak transcription	Brain Hippocampus Middle	brain
26	chr4:144395200-144400800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr4:144395200-144404000	Weak transcription	Liver	Liver
28	chr4:144395600-144400600	Weak transcription	Primary B cells from cord blood	blood
29	chr4:144397400-144399800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:144397400-144400600	Weak transcription	Left Ventricle	heart
31	chr4:144397400-144410400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr4:144397600-144401400	Weak transcription	Brain Substantia Nigra	brain
33	chr4:144397800-144399400	Weak transcription	Adipose Nuclei	Adipose
34	chr4:144398200-144399800	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr4:144398600-144400800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr4:144399000-144403200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr4:144399000-144406000	Weak transcription	Fetal Lung	lung
38	chr4:144399200-144399600	Weak transcription	Fetal Stomach	stomach

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