Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10085001	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11933278	0.83[EUR][1000 genomes]
rs11940828	0.83[EUR][1000 genomes]
rs11940915	0.83[EUR][1000 genomes]
rs17017770	0.83[EUR][1000 genomes]
rs28924081	1.00[EUR][1000 genomes]
rs28924084	1.00[EUR][1000 genomes]
rs34140972	0.83[EUR][1000 genomes]
rs57652703	0.83[EUR][1000 genomes]
rs59649455	0.83[EUR][1000 genomes]
rs60848167	0.83[EUR][1000 genomes]
rs6811304	0.83[EUR][1000 genomes]
rs6815420	0.83[EUR][1000 genomes]
rs6817754	0.83[EUR][1000 genomes]
rs6820204	1.00[EUR][1000 genomes]
rs6842199	0.83[EUR][1000 genomes]
rs6858550	0.83[EUR][1000 genomes]
rs72936486	1.00[EUR][1000 genomes]
rs72949189	0.83[EUR][1000 genomes]
rs72949196	0.83[EUR][1000 genomes]
rs72949200	0.83[EUR][1000 genomes]
rs7691050	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757960	chr4:144348293-145131592	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	esv2759288	chr4:144348293-145131592	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv830103	chr4:144393398-144553045	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144376800-144410000	Weak transcription	Pancreas	Pancrea
2	chr4:144382800-144410200	Weak transcription	Gastric	stomach
3	chr4:144383000-144405800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr4:144384200-144409800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:144392200-144406000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:144393600-144409200	Weak transcription	Placenta	Placenta
7	chr4:144395200-144404000	Weak transcription	Liver	Liver
8	chr4:144397400-144410400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:144399000-144403200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:144399000-144406000	Weak transcription	Fetal Lung	lung
11	chr4:144400800-144402400	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr4:144401400-144402600	Enhancers	Brain Substantia Nigra	brain
13	chr4:144401400-144403200	Enhancers	Brain Hippocampus Middle	brain
14	chr4:144402200-144402400	Enhancers	Brain Angular Gyrus	brain

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