Variant report

Variant	rs6858550
Chromosome Location	chr4:144346018-144346019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10085001	0.83[EUR][1000 genomes]
rs11933278	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11940828	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11940915	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17017770	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28755855	0.83[EUR][1000 genomes]
rs28924081	0.83[EUR][1000 genomes]
rs28924084	0.83[EUR][1000 genomes]
rs34140972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57652703	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59649455	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60848167	1.00[EUR][1000 genomes]
rs6811304	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6815420	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6817754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6820204	0.83[EUR][1000 genomes]
rs6842199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72936486	0.83[EUR][1000 genomes]
rs72949189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72949196	1.00[EUR][1000 genomes]
rs72949200	1.00[EUR][1000 genomes]
rs7691050	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7695623	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv980261	chr4:144345363-144347263	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144318200-144362400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:144327800-144361200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:144327800-144388200	Weak transcription	HepG2	liver
4	chr4:144328000-144346400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:144328000-144359200	Weak transcription	Esophagus	oesophagus
6	chr4:144329000-144359400	Weak transcription	K562	blood
7	chr4:144329800-144352600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:144332400-144359200	Weak transcription	Pancreas	Pancrea
9	chr4:144332800-144359200	Weak transcription	HMEC	breast
10	chr4:144333000-144346200	Weak transcription	Ovary	ovary
11	chr4:144333000-144346400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:144333000-144358800	Weak transcription	Right Ventricle	heart
13	chr4:144333000-144364600	Weak transcription	NHEK	skin
14	chr4:144333200-144350600	Weak transcription	NHDF-Ad	bronchial
15	chr4:144333400-144346400	Weak transcription	Gastric	stomach
16	chr4:144333400-144350800	Weak transcription	Fetal Brain Male	brain
17	chr4:144333400-144359400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:144333400-144362400	Weak transcription	NH-A	brain
19	chr4:144333600-144347800	Weak transcription	Fetal Brain Female	brain
20	chr4:144333600-144359800	Weak transcription	HSMMtube	muscle
21	chr4:144333800-144348000	Weak transcription	Brain Germinal Matrix	brain
22	chr4:144333800-144348600	Weak transcription	Aorta	Aorta
23	chr4:144333800-144350600	Weak transcription	NHLF	lung
24	chr4:144334000-144359400	Weak transcription	HUVEC	blood vessel
25	chr4:144336400-144392200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr4:144337000-144350600	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr4:144338200-144350400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr4:144338400-144346400	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr4:144338600-144346200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr4:144338600-144359200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr4:144339200-144346400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr4:144339400-144346200	Weak transcription	Left Ventricle	heart
33	chr4:144339400-144346200	Weak transcription	Lung	lung
34	chr4:144339400-144346400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:144339400-144346400	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr4:144339400-144348600	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr4:144339400-144350400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr4:144339400-144350400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr4:144339400-144350800	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr4:144339400-144394600	Weak transcription	Colonic Mucosa	Colon
41	chr4:144339600-144346200	Weak transcription	Fetal Muscle Trunk	muscle
42	chr4:144339600-144346400	Weak transcription	Liver	Liver
43	chr4:144339600-144346400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr4:144339600-144346400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr4:144339600-144350400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr4:144339600-144350600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr4:144339600-144354600	Weak transcription	Placenta	Placenta
48	chr4:144339600-144359400	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr4:144340000-144350600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr4:144340000-144359400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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