Variant report

Variant	rs10085318
Chromosome Location	chr6:82783699-82783700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82773916..82775814-chr6:82782251..82783759,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10485091	0.86[EUR][1000 genomes]
rs12333288	0.86[EUR][1000 genomes]
rs16893914	0.86[EUR][1000 genomes]
rs28449783	0.86[EUR][1000 genomes]
rs4263626	0.84[EUR][1000 genomes]
rs4294052	0.86[EUR][1000 genomes]
rs5017105	0.86[EUR][1000 genomes]
rs56850863	0.86[EUR][1000 genomes]
rs56970608	0.86[EUR][1000 genomes]
rs57046652	0.85[EUR][1000 genomes]
rs61537617	0.86[EUR][1000 genomes]
rs6924009	0.87[EUR][1000 genomes]
rs7740829	0.85[EUR][1000 genomes]
rs7751794	0.84[EUR][1000 genomes]
rs9294245	0.84[EUR][1000 genomes]
rs9443950	0.86[EUR][1000 genomes]
rs9443957	0.88[EUR][1000 genomes]
rs9443958	0.88[EUR][1000 genomes]
rs9443959	0.88[EUR][1000 genomes]
rs9443962	0.86[EUR][1000 genomes]
rs9443965	0.86[EUR][1000 genomes]
rs9449393	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449394	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449395	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449397	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9449399	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449400	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449410	0.93[EUR][1000 genomes]
rs9449422	0.90[EUR][1000 genomes]
rs9449424	0.86[EUR][1000 genomes]
rs9449428	0.86[EUR][1000 genomes]
rs9449429	0.86[EUR][1000 genomes]
rs9449430	0.85[EUR][1000 genomes]
rs9449432	0.86[EUR][1000 genomes]
rs9449433	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82778800-82784600	Weak transcription	Right Ventricle	heart
2	chr6:82781000-82784600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:82782400-82786200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:82782600-82784400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:82782800-82786400	Weak transcription	HSMM	muscle
6	chr6:82783200-82783800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:82783200-82784600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:82783200-82785600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:82783400-82784400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:82783400-82786200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:82783400-82786400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:82783400-82793200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:82783400-82797800	Weak transcription	Left Ventricle	heart
14	chr6:82783600-82784400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:82783600-82784600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:82783600-82784600	Weak transcription	Fetal Heart	heart
17	chr6:82783600-82784600	Weak transcription	NHDF-Ad	bronchial
18	chr6:82783600-82786400	Weak transcription	Fetal Muscle Leg	muscle
19	chr6:82783600-82786400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:82783600-82786400	Weak transcription	Osteobl	bone
21	chr6:82783600-82788000	Weak transcription	HepG2	liver

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