Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10085318	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485091	0.80[EUR][1000 genomes]
rs12333288	0.80[EUR][1000 genomes]
rs16893914	0.80[EUR][1000 genomes]
rs28449783	0.80[EUR][1000 genomes]
rs4294052	0.80[EUR][1000 genomes]
rs5017105	0.80[EUR][1000 genomes]
rs56850863	0.80[EUR][1000 genomes]
rs56970608	0.80[EUR][1000 genomes]
rs61537617	0.80[EUR][1000 genomes]
rs6924009	0.81[EUR][1000 genomes]
rs9443950	0.80[EUR][1000 genomes]
rs9443957	0.82[EUR][1000 genomes]
rs9443958	0.82[EUR][1000 genomes]
rs9443959	0.82[EUR][1000 genomes]
rs9443962	0.80[EUR][1000 genomes]
rs9443965	0.80[EUR][1000 genomes]
rs9449393	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449395	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449397	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9449399	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449400	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449410	0.87[EUR][1000 genomes]
rs9449422	0.84[EUR][1000 genomes]
rs9449424	0.80[EUR][1000 genomes]
rs9449428	0.80[EUR][1000 genomes]
rs9449429	0.80[EUR][1000 genomes]
rs9449432	0.80[EUR][1000 genomes]
rs9449433	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv527345	chr6:82794111-82797619	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82783400-82797800	Weak transcription	Left Ventricle	heart
2	chr6:82792200-82799600	Enhancers	HepG2	liver
3	chr6:82792800-82795200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:82793800-82794600	Enhancers	Brain Hippocampus Middle	brain
5	chr6:82793800-82795000	Enhancers	Brain Substantia Nigra	brain
6	chr6:82794000-82794600	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr6:82794000-82794800	Enhancers	Brain Anterior Caudate	brain
8	chr6:82794400-82794600	Enhancers	Brain Angular Gyrus	brain
9	chr6:82794400-82794800	Enhancers	Brain Cingulate Gyrus	brain

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