Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10085318	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485091	0.80[EUR][1000 genomes]
rs12333288	0.80[EUR][1000 genomes]
rs16893914	0.80[EUR][1000 genomes]
rs28449783	0.80[EUR][1000 genomes]
rs4294052	0.80[EUR][1000 genomes]
rs5017105	0.80[EUR][1000 genomes]
rs56850863	0.80[EUR][1000 genomes]
rs56970608	0.80[EUR][1000 genomes]
rs61537617	0.80[EUR][1000 genomes]
rs6924009	0.81[EUR][1000 genomes]
rs9443950	0.80[EUR][1000 genomes]
rs9443957	0.82[EUR][1000 genomes]
rs9443958	0.82[EUR][1000 genomes]
rs9443959	0.82[EUR][1000 genomes]
rs9443962	0.80[EUR][1000 genomes]
rs9443965	0.80[EUR][1000 genomes]
rs9449394	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449395	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449397	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9449399	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449400	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449410	0.87[EUR][1000 genomes]
rs9449422	0.84[EUR][1000 genomes]
rs9449424	0.80[EUR][1000 genomes]
rs9449428	0.80[EUR][1000 genomes]
rs9449429	0.80[EUR][1000 genomes]
rs9449432	0.80[EUR][1000 genomes]
rs9449433	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82783400-82793200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:82783400-82797800	Weak transcription	Left Ventricle	heart
3	chr6:82792200-82799600	Enhancers	HepG2	liver
4	chr6:82792800-82794400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:82792800-82795200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:82793000-82793200	Weak transcription	Osteobl	bone

Quick Search: