Variant report

Variant	rs10085389
Chromosome Location	chr7:38522596-38522597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1019286	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1019287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10229905	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs10232299	0.82[JPT][hapmap]
rs10243535	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10245053	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs10246472	1.00[JPT][hapmap]
rs10248732	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10249106	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250342	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs10255786	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs10259475	0.82[JPT][hapmap]
rs10264790	1.00[JPT][hapmap]
rs10266944	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs10267691	0.82[JPT][hapmap]
rs10276324	0.82[JPT][hapmap]
rs10276544	1.00[JPT][hapmap]
rs10277878	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs10280133	0.82[JPT][hapmap]
rs10280220	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs1974673	0.83[ASN][1000 genomes]
rs1974674	0.83[ASN][1000 genomes]
rs2215954	0.83[ASN][1000 genomes]
rs2267807	0.82[JPT][hapmap]
rs2284248	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs28655138	0.83[ASN][1000 genomes]
rs3807390	0.82[JPT][hapmap]
rs3823595	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs4723756	0.82[JPT][hapmap]
rs55948005	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6462836	0.83[ASN][1000 genomes]
rs6954477	1.00[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs7799083	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758112	chr7:38218703-38523455	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	esv2759524	chr7:38218703-38523455	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv427776	chr7:38218703-38523455	Genic enhancers Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	nsv830966	chr7:38393663-38602553	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38499800-38523600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:38501800-38522600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:38502600-38549400	Weak transcription	Fetal Stomach	stomach
4	chr7:38502800-38533800	Weak transcription	Aorta	Aorta
5	chr7:38520600-38522600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:38522200-38524200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:38522400-38523000	ZNF genes & repeats	Fetal Lung	lung
8	chr7:38522400-38523000	ZNF genes & repeats	Fetal Muscle Leg	muscle

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