Variant report

Variant	rs10267691
Chromosome Location	chr7:38518459-38518460
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:38512209..38514500-chr7:38517121..38519244,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10085389	0.82[JPT][hapmap]
rs1019286	0.82[JPT][hapmap]
rs1019287	0.82[JPT][hapmap]
rs10229905	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10232299	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10238666	0.96[ASN][1000 genomes]
rs10245053	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10246472	0.82[JPT][hapmap]
rs10247761	0.81[ASN][1000 genomes]
rs10248732	0.82[JPT][hapmap]
rs10249106	0.82[JPT][hapmap]
rs10249698	0.96[ASN][1000 genomes]
rs10250342	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10255786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10259475	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10264790	0.82[JPT][hapmap]
rs10264958	0.96[ASN][1000 genomes]
rs10266944	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs10276324	1.00[JPT][hapmap]
rs10276544	0.82[JPT][hapmap]
rs10277878	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10280133	1.00[JPT][hapmap]
rs10280220	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1030016	0.82[CHB][hapmap]
rs11486852	0.87[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1158376	0.81[ASN][1000 genomes]
rs11763753	0.82[CHB][hapmap]
rs2014872	0.92[ASN][1000 genomes]
rs2267807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2267811	0.88[ASN][1000 genomes]
rs2284248	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs28412720	0.96[ASN][1000 genomes]
rs28567602	0.93[AFR][1000 genomes]
rs2893559	0.81[ASN][1000 genomes]
rs3807390	1.00[JPT][hapmap]
rs3823595	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4419725	0.96[ASN][1000 genomes]
rs4723756	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs57983498	0.96[ASN][1000 genomes]
rs73120255	0.89[ASN][1000 genomes]
rs7799083	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758112	chr7:38218703-38523455	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	esv2759524	chr7:38218703-38523455	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv427776	chr7:38218703-38523455	Genic enhancers Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
4	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	nsv830965	chr7:38350614-38521047	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv830966	chr7:38393663-38602553	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38499800-38523600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:38501000-38522400	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:38501800-38522600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:38502600-38549400	Weak transcription	Fetal Stomach	stomach
5	chr7:38502800-38533800	Weak transcription	Aorta	Aorta
6	chr7:38503800-38522400	Weak transcription	Fetal Lung	lung
7	chr7:38516400-38519400	Enhancers	HUVEC	blood vessel
8	chr7:38516400-38519800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:38517200-38518800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:38517800-38518600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr7:38518400-38519000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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