Variant report

Variant	rs10276544
Chromosome Location	chr7:38550840-38550841
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10085389	1.00[JPT][hapmap]
rs1019286	1.00[JPT][hapmap]
rs1019287	1.00[JPT][hapmap]
rs10229905	0.82[JPT][hapmap]
rs10232299	0.82[JPT][hapmap]
rs10245053	0.82[JPT][hapmap]
rs10246472	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248732	1.00[JPT][hapmap]
rs10249106	1.00[JPT][hapmap]
rs10250342	0.82[JPT][hapmap]
rs10255786	0.82[JPT][hapmap]
rs10259475	0.82[JPT][hapmap]
rs10259950	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10264790	0.96[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10266944	0.82[JPT][hapmap]
rs10267691	0.82[JPT][hapmap]
rs10276324	0.82[JPT][hapmap]
rs10277878	0.82[JPT][hapmap]
rs10280133	0.96[CEU][hapmap];0.82[JPT][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs10280220	0.82[JPT][hapmap]
rs12536311	0.83[TSI][hapmap]
rs2028209	0.85[TSI][hapmap]
rs2043787	0.86[MKK][hapmap]
rs2083147	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2267807	0.82[JPT][hapmap]
rs2284248	0.82[JPT][hapmap]
rs3807390	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs3807396	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3823595	0.82[JPT][hapmap]
rs4723756	0.82[JPT][hapmap]
rs4723762	0.86[MKK][hapmap]
rs6954477	0.85[JPT][hapmap]
rs7777111	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7785965	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7799083	0.96[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs967022	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv830966	chr7:38393663-38602553	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10276544	LOC646999	cis	parietal	SCAN
rs10276544	ELMO1	cis	parietal	SCAN
rs10276544	GLI3	cis	parietal	SCAN
rs10276544	STARD3NL	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38528600-38553000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:38548000-38553200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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