Variant report

Variant	rs10085558
Chromosome Location	chr7:37985280-37985281
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10488618	0.90[EUR][1000 genomes]
rs16879765	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17171229	0.92[EUR][1000 genomes]
rs17171238	0.87[EUR][1000 genomes]
rs17171240	0.85[EUR][1000 genomes]
rs2044830	0.85[EUR][1000 genomes]
rs2122620	0.85[EUR][1000 genomes]
rs2122625	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2290221	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2290223	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6965376	1.00[CEU][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:37963000-37988800	Weak transcription	Thymus	Thymus
2	chr7:37964200-37992600	Weak transcription	Hela-S3	cervix
3	chr7:37965200-37988400	Weak transcription	Dnd41	blood
4	chr7:37978400-37994200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr7:37979600-37991000	Weak transcription	Fetal Lung	lung
6	chr7:37981800-37985400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr7:37982000-37985400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr7:37982000-37985400	Enhancers	Fetal Muscle Leg	muscle
9	chr7:37982400-37985600	Enhancers	NHDF-Ad	bronchial
10	chr7:37982600-37985600	Enhancers	Ovary	ovary
11	chr7:37982800-37986800	Weak transcription	Aorta	Aorta
12	chr7:37982800-37988400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:37982800-37988400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:37982800-37990000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr7:37982800-37992400	Weak transcription	Spleen	Spleen
16	chr7:37983000-37986600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr7:37983000-37987400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:37983000-37987400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr7:37983000-37987400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:37983000-37988600	Weak transcription	Liver	Liver
21	chr7:37983600-37986800	Weak transcription	Right Atrium	heart
22	chr7:37983600-37987200	Weak transcription	Left Ventricle	heart
23	chr7:37983600-37987400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr7:37983600-37987400	Weak transcription	Lung	lung
25	chr7:37983800-37987400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr7:37984000-37993200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr7:37984200-37985400	Enhancers	HepG2	liver
28	chr7:37984200-37987200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr7:37984200-37993600	Weak transcription	Brain Angular Gyrus	brain
30	chr7:37984400-37985400	Genic enhancers	A549	lung
31	chr7:37984400-37995000	Weak transcription	Brain Hippocampus Middle	brain
32	chr7:37984600-37985400	Enhancers	Osteobl	bone
33	chr7:37984600-37987000	Weak transcription	Right Ventricle	heart
34	chr7:37984600-37988400	Weak transcription	HSMM	muscle
35	chr7:37984600-37988800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr7:37984600-37992000	Weak transcription	Brain Substantia Nigra	brain
37	chr7:37984600-37992000	Weak transcription	Pancreas	Pancrea
38	chr7:37984800-37986600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr7:37984800-37986800	Weak transcription	Psoas Muscle	Psoas
40	chr7:37984800-37989800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr7:37984800-37993600	Weak transcription	Brain Cingulate Gyrus	brain
42	chr7:37985000-37986600	Weak transcription	Fetal Heart	heart
43	chr7:37985000-37988400	Weak transcription	Adipose Nuclei	Adipose
44	chr7:37985000-37990000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
45	chr7:37985200-37985400	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr7:37985200-37986800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr7:37985200-37987200	Weak transcription	HSMMtube	muscle
48	chr7:37985200-37988600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr7:37985200-37988600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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