Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10085558	0.90[EUR][1000 genomes]
rs1376254	0.86[ASN][1000 genomes]
rs1376267	0.86[ASN][1000 genomes]
rs1464716	0.83[ASN][1000 genomes]
rs1524051	0.83[ASN][1000 genomes]
rs1524052	0.83[ASN][1000 genomes]
rs16879765	0.92[EUR][1000 genomes]
rs17171229	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17171238	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171240	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17171245	0.86[ASN][1000 genomes]
rs17171248	0.86[ASN][1000 genomes]
rs2044830	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2122620	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2122625	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2290221	0.92[EUR][1000 genomes]
rs2290223	0.92[EUR][1000 genomes]
rs2392527	0.83[ASN][1000 genomes]
rs4430011	0.83[ASN][1000 genomes]
rs6965376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs952368	0.83[ASN][1000 genomes]
rs952369	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:37992200-38017600	Weak transcription	Ovary	ovary
2	chr7:37992600-38026800	Weak transcription	Pancreas	Pancrea
3	chr7:38009200-38014800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:38012000-38021400	Weak transcription	HSMMtube	muscle
5	chr7:38012200-38016600	Weak transcription	NHDF-Ad	bronchial
6	chr7:38012200-38016800	Weak transcription	Osteobl	bone
7	chr7:38012400-38013400	Enhancers	K562	blood
8	chr7:38012600-38013800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:38012800-38013400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr7:38012800-38013800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:38013000-38013600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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