Variant report

Variant	rs17171229
Chromosome Location	chr7:37996682-37996683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10085558	0.92[EUR][1000 genomes]
rs10488618	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16879765	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17171238	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17171240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2044830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2122620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2122625	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2290221	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2290223	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6965376	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:37987400-37997200	Weak transcription	Psoas Muscle	Psoas
2	chr7:37989400-37998800	Weak transcription	Thymus	Thymus
3	chr7:37992200-38017600	Weak transcription	Ovary	ovary
4	chr7:37992400-37997400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr7:37992400-37998200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:37992600-37999200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr7:37992600-38026800	Weak transcription	Pancreas	Pancrea
8	chr7:37993000-37997400	Weak transcription	Aorta	Aorta
9	chr7:37993000-38007600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr7:37993400-37999600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:37993800-38007400	Weak transcription	A549	lung
12	chr7:37996000-37997600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:37996000-37997800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:37996200-37996800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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