Variant report

Variant	rs952369
Chromosome Location	chr7:38046404-38046405
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10488618	0.83[ASN][1000 genomes]
rs10499601	0.81[EUR][1000 genomes]
rs11509900	0.80[EUR][1000 genomes]
rs12113464	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12114004	0.82[EUR][1000 genomes]
rs12154511	0.82[EUR][1000 genomes]
rs1349396	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1376254	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1376267	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1403983	0.82[EUR][1000 genomes]
rs1464716	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1524051	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1524052	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171238	0.83[ASN][1000 genomes]
rs17171240	0.86[ASN][1000 genomes]
rs17171245	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17171248	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17171277	0.84[EUR][1000 genomes]
rs1949774	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2044830	0.86[ASN][1000 genomes]
rs2122620	0.83[ASN][1000 genomes]
rs2140532	0.82[EUR][1000 genomes]
rs2392527	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4430011	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55971087	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57948667	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61618798	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6965376	1.00[CHB][hapmap];0.82[CHD][hapmap];0.84[GIH][hapmap];0.85[JPT][hapmap];0.86[TSI][hapmap];0.83[ASN][1000 genomes]
rs73691906	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73691948	0.81[EUR][1000 genomes]
rs73691971	0.82[EUR][1000 genomes]
rs73691975	0.82[EUR][1000 genomes]
rs952368	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9648058	0.81[EUR][1000 genomes]
rs9648456	0.94[EUR][1000 genomes]
rs9648458	0.81[EUR][1000 genomes]
rs9648459	0.81[EUR][1000 genomes]
rs9785004	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8074	chr7:37865340-38210087	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38042400-38046800	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr7:38042800-38046600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:38043000-38046600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:38045400-38046600	Enhancers	HSMMtube	muscle
5	chr7:38045400-38048000	Enhancers	HSMM	muscle
6	chr7:38045800-38047400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:38046400-38046800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:38046400-38047400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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